Tools used in MMiRNA-Viewer2
DATABASES
- microRNA Databases
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HMDD (The Human microRNA Disease Database)
(Li, Yang et al, 2013, http://cmbi.bjmu.edu.cn/hmdd)
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SomamiR
(Bhattacharya, Anindya, and Yan Cui, 2016, http://compbio.uthsc.edu/SomamiR/home.php)
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miRBase (Database of published miRNA sequences and annotation)
(Kozomara, Ana, and Sam Griffiths-Jones, 2014, http://www.mirbase.org/)
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KEGG (Kyoto Encyclopedia of Genes and Genomes)
(Kanehisa, Minoru, and Susumu Goto, 2000, http://www.genome.ad.jp/kegg/)
- mRNA Databases
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DAVID (Database for Annotation, Visualization and Integrated Discovery)
(Huang Da Wei et al, 2009; Huang Da Wei et al, 2009, https://david.ncifcrf.gov/)
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COSMIC (Catalogue Of Somatic Mutations In Cancer)
(Forbes, Simon A. et al 2017, http://cancer.sanger.ac.uk/cosmic)
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Cancertope
(Gupta, Sudheer et al. 2017, http://crdd.osdd.net/raghava/cancertope/)
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KEGG (Kyoto Encyclopedia of Genes and Genomes)
(Kanehisa, Minoru, and Susumu Goto, 2000, http://www.genome.ad.jp/kegg/)